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The year is Universal Century 0088. Directly after the end of the Gryps War, Haman Karn and her army of Zeon remnants on the asteroid Axis begin their quest of reviving the lost empire of the Zabi's, and proclaim themselves as the Neo-Zeon. With the Earth Federation as hapless as ever, only the Anti-Earth Union Group (AEUG) is able oppose the plans of Neo-Zeon. In need of all the help it can get after being decimated in the previous war and losing many of its key members, the AEUG ship Argama enlists the aid of a young junk collector from the Side 1 colony of Shangri-La named Judau Ashta to pilot its newest mobile suit, the ZZ Gundam.

Called “Juggernaut,” these are the unmanned combat drones developed by the Republic of San Magnolia in answer to the attacks by the autonomous unmanned drones of the neighboring Empire of Giad, the “Legion”. But they’re only unmanned in name. In reality, they are piloted by the Eighty-sixers—those considered to be less than human and treated as mere tools. Determined to achieve his own mysterious ends, Shin, the captain of Spearhead Squadron, which is comprised of Eighty-sixers, continues to fight a hopeless war on a battlefield where only death awaits him.

The year is 2307 A.D. Although fossil fuels have been depleted, humanity has obtained a new source of energy to replace them, in the form of a large-scale solar power generation system based on three huge orbital elevators. However, the benefits of this system are available only to a handful of major powers and their allies. In this world of never-ending conflict, a private armed organization appears, dedicated to the elimination of war through armed force. Its name is Celestial Being, and it is in possession of "Gundam" mobile suits.

Ensign Shiro Amada is transferred to Southeast Asia to take command of the 08th MS Team. In their first guerilla operation, Shiro's team is tasked with distracting the Zeon forces while Federation ground troops locate a mysterious new Zeon weapon.

Universal Century 0087, 7 years have passed since the end of the One Year War between the Earth Federation and the Principality of Zeon. The Earth Federation has created an elite task force, known as the Titans, who are responsible for hunting the remaining Zeon forces. However, the power-hungry Titans have spurred the creation of a rebellious faction called the Anti-Earth Union Group (AEUG).

Japan has been invaded and conquered by the Britannian Empire. Japan is now known as Area 11 and its citizens known as Elevens. The Britannian Empire takes away Japan's autonomous power and imposes its rule through the use of Knightmares. The Empire's rule has never faltered, but cracks have begun to show...

Year Seven of the Kowa Period, in the former Hokkaido Block, live brothers known as the Nameless Mercenaries. The Emperor, Callis al Britannia, tries to plunge the world into chaos with the help of his servant, Norland, and his Einberg Knights. Rozé and Ash take action from the Northern lands.

After Koji Kabuto and Sayaka Yumi leave to the USA, it's up to the rash orphan Tetsuya Tsurugi to pilot the next Mazinger robot: the Great Mazinger. Under the direction of Dr. Kenzo Kabuto and helped by his adoptive sister Jun Honou, Tetsuya battles the Miccene Empire.

In the near future, humanity has taken its first steps towards journeying into the far reaches of the galaxy. Upon doing so they discover a huge race of insectoid aliens known as "Space Monsters." These aliens seem dedicated to the eradication of mankind as they near closer and closer to discovering Earth. In response, humanity develops giant fighting robots piloted by hand-picked youth from around the world. Shortly after the discovery of the aliens, Noriko Takaya, the daughter of a famous deceased space captain, enters a training school despite her questionable talents as a pilot. There, she meets her polar opposite, the beautiful and talented Kazumi Amano, and is unexpectedly made to work together with her as they attempt to overcome the trauma of war as well as their own emotions.

In 1972, the Apollo 17 mission discovered a hypergate to Mars on the surface of the moon. Soon a war breaks out between Earth and Mars, and Martian soldiers begin to descend from the sky, riding steel giants, intent on exterminating humanity.

When a young laborer escapes to the world aboveground, he discovers a violent land in which humans battle robots controlled by a power-hungry noble.

In the Year F.C. (Future Century) 60, much of mankind inhabits space colonies which orbit the Earth. Dominance over the colonies is decided once every four years by a large tournament in which each nation sends a single representative to fight the others with a giant robot called a Gundam. Domon Kashuu is selected to represent Neo-Japan in one of these tournaments, but he fights less to ensure his nation's victory than to find his brother, who has been blamed for the deaths of Domon's parents and the disappearance of a very dangerous weapon, the Devil Gundam (Dark Gundam).